6JFA

Met-Ala-Ser bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.238 

Starting Model: experimental
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This is version 1.1 of the entry. See complete history


Literature

Met-Ala-Ser bound crystal structure of class I type b peptide deformylase from Pseudomonas aeruginosa

Lee, I.H.Ho, T.H.Kang, L.W.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peptide deformylase
A, B
170Pseudomonas aeruginosaMutation(s): 0 
EC: 3.5.1.88
UniProt
Find proteins for A0A071LDC0 (Pseudomonas aeruginosa)
Explore A0A071LDC0 
Go to UniProtKB:  A0A071LDC0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A071LDC0
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
MET-ALA-SER3Pseudomonas aeruginosaMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.288 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.238 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.815α = 90
b = 122.826β = 90
c = 143.978γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
HKL-2000data collection
HKL-2000data reduction
MOLREPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-02-12
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Derived calculations, Refinement description