Structural basis for CD8+ T cells auto-reactivity in LCMV infection
Allerbring, E., Duru, A.D., Nygren, P.A., Sandalova, T., Achour, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
H-2 class I histocompatibility antigen, D-B alpha chain | 276 | Mus musculus | Mutation(s): 0  Gene Names: H2-D1 | ![]() | |
UniProt | |||||
Find proteins for P01899 (Mus musculus) Explore P01899  Go to UniProtKB:  P01899 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01899 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 119 | Mus musculus | Mutation(s): 1  Gene Names: B2m | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01887 (Mus musculus) Explore P01887  Go to UniProtKB:  P01887 | |||||
IMPC:  MGI:88127 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01887 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
T cell receptor alpha variable 14-1,T-cell receptor alpha chain C region | C [auth G] | 205 | Mus musculus | Mutation(s): 0  Gene Names: Trav14-1, Tcra | ![]() |
UniProt | |||||
Find proteins for A0A0G2JF94 (Mus musculus) Explore A0A0G2JF94  Go to UniProtKB:  A0A0G2JF94 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0G2JF94 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
T-cell receptor beta chain V region C5,T-cell receptor beta-1 chain C region | D [auth H] | 238 | Mus musculus | Mutation(s): 0  | ![]() |
UniProt | |||||
Find proteins for P04213 (Mus musculus) Explore P04213  Go to UniProtKB:  P04213 | |||||
Find proteins for P01852 (Mus musculus) Explore P01852  Go to UniProtKB:  P01852 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | P01852P04213 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Dopamine beta-hydroxylase | E [auth P] | 9 | Mus musculus | Mutation(s): 1  EC: 1.14.17.1 | ![]() |
UniProt | |||||
Find proteins for Q64237 (Mus musculus) Explore Q64237  Go to UniProtKB:  Q64237 | |||||
Entity Groups   | |||||
UniProt Group | Q64237 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 256.383 | α = 90 |
b = 46.622 | β = 94.2 |
c = 90.059 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |