Discovery of an Unexpected Similarity in Ligand Binding Between BRD4 and PPARgamma
Humbeck, L., Pretzel, J., Spitzer, S., Koch, O.(2019) ChemRxiv 
Experimental Data Snapshot
Starting Model: experimental
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(2019) ChemRxiv 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Bromodomain-containing protein 4 | 127 | Homo sapiens | Mutation(s): 1  Gene Names: BRD4, HUNK1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60885 (Homo sapiens) Explore O60885  Go to UniProtKB:  O60885 | |||||
PHAROS:  O60885 GTEx:  ENSG00000141867  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60885 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EGH (Subject of Investigation/LOI) Query on EGH | C [auth A] | (4~{R})-4-(5-bromanyl-2-fluoranyl-phenyl)-5,6,7-trimethoxy-3,4-dihydro-1~{H}-quinolin-2-one C18 H17 Br F N O4 PWBKGPVHXOKOOE-NSHDSACASA-N | |||
EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 37.529 | α = 90 |
b = 44.329 | β = 90 |
c = 78.517 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
PHASER | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XSCALE | data scaling |
Coot | model building |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation | Germany | SPP 1736 |
German Federal Ministry for Education and Research (BMBF) | Germany | BMBF Grant 1316053 |