6COI

AtHNL enantioselectivity mutant At-A9-H7 Apo, Y13C,Y121L,P126F,L128W,C131T,A209I with CYANIDE, benzaldehyde, MANDELIC ACID NITRILE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.193 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

AtHNL enantioselectivity mutants

Jones, B.J.Desrouleaux, R.Kazlauskas, R.J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Alpha-hydroxynitrile lyase
A, B
260Arabidopsis thalianaMutation(s): 6 
Gene Names: HNLMES5At5g10300F18D22_70
EC: 4.1.2.10
UniProt
Find proteins for Q9LFT6 (Arabidopsis thaliana)
Explore Q9LFT6 
Go to UniProtKB:  Q9LFT6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9LFT6
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MNN
Query on MNN

Download Ideal Coordinates CCD File 
I [auth B](S)-MANDELIC ACID NITRILE
C8 H7 N O
NNICRUQPODTGRU-MRVPVSSYSA-N
MXN
Query on MXN

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H [auth B](2R)-hydroxy(phenyl)ethanenitrile
C8 H7 N O
NNICRUQPODTGRU-QMMMGPOBSA-N
HBX
Query on HBX

Download Ideal Coordinates CCD File 
E [auth A],
F [auth A],
G [auth B]
benzaldehyde
C7 H6 O
HUMNYLRZRPPJDN-UHFFFAOYSA-N
GOL
Query on GOL

Download Ideal Coordinates CCD File 
C [auth A]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
CYN
Query on CYN

Download Ideal Coordinates CCD File 
D [auth A]CYANIDE ION
C N
XFXPMWWXUTWYJX-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.258 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.193 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.917α = 90
b = 86.943β = 90
c = 122.982γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
HKL-2000data scaling
PDB_EXTRACTdata extraction
REFMACphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States5R01GM102205

Revision History  (Full details and data files)

  • Version 1.0: 2019-03-20
    Type: Initial release
  • Version 1.1: 2019-04-10
    Changes: Author supporting evidence, Data collection
  • Version 1.2: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.3: 2023-10-04
    Changes: Data collection, Database references, Refinement description