6C6D

20mer crystal structure of CC chemokine 5 (CCL5)

PDB DOI: https://doi.org/10.2210/pdb6C6D/pdb

Classification: CYTOKINE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2018-01-18 Released: 2019-01-23
Deposition Author(s): Liang, W.G., Tang, W.J.
Funding Organization(s): American Heart Association

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 5.50 Å
R-Value Free: 0.286
R-Value Work: 0.248
R-Value Observed: 0.250

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

20mer crystal structure of CC chemokine 5 (CCL5)

Liang, W.G., Tang, W.J.

To be published.

Macromolecule Content

Total Structure Weight: 150.29 kDa
Atom Count: 10,284
Modelled Residue Count: 1,264
Deposited Residue Count: 1,300
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
C-C motif chemokine 5	A B C D E A, B, C, D, E, F, G, H, I, J, K, L, M [auth S], N [auth T], O [auth M], P [auth N], Q [auth O], R [auth P], S [auth Q], T [auth R]	65	Homo sapiens	Mutation(s): 0 Gene Names: CCL5, D17S136E, SCYA5
UniProt & NIH Common Fund Data Resources
Find proteins for P13501 (Homo sapiens) Explore P13501 Go to UniProtKB: P13501
PHAROS: P13501 GTEx: ENSG00000271503
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P13501
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 5.50 Å
R-Value Free: 0.286
R-Value Work: 0.248
R-Value Observed: 0.250
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.866	α = 90
b = 322.783	β = 90
c = 157.512	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2019-01-23

Deposition Author(s):

Funding Organization	Location	Grant Number
American Heart Association	United States	17GRNT33400028

Revision History (Full details and data files)

Version 1.0: 2019-01-23
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.