Crystal structure of a nucleoside diphosphate kinase NDK from Helicobacter pylori
Edwards, T.E., Dranow, D.M., Lorimer, D.D.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nucleoside diphosphate kinase | 145 | Helicobacter pylori | Mutation(s): 0  Gene Names: ndk, HPG27_182 EC: 2.7.4.6 | ||
UniProt | |||||
Find proteins for B5Z9W9 (Helicobacter pylori (strain G27)) Explore B5Z9W9  Go to UniProtKB:  B5Z9W9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B5Z9W9 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEZ Query on HEZ | L [auth C], N [auth H] | HEXANE-1,6-DIOL C6 H14 O2 XXMIOPMDWAUFGU-UHFFFAOYSA-N | |||
MPD Query on MPD | K [auth B], M [auth D] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
IPA Query on IPA | I [auth A], J [auth B] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 63.19 | α = 90 |
b = 93.4 | β = 90 |
c = 208.49 | γ = 90 |
Software Name | Purpose |
---|---|
XSCALE | data scaling |
MOLREP | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |