6ZN1

Trehalose transferase bound to alpha-D-glucopyranosyl-beta-galactopyranose from Thermoproteus uzoniensis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.202 

Starting Model: other
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Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Anomeric Selectivity of Trehalose Transferase with Rare l-Sugars.

Mestrom, L.Marsden, S.R.van der Eijk, H.Laustsen, J.U.Jeffries, C.M.Svergun, D.I.Hagedoorn, P.L.Bento, I.Hanefeld, U.

(2020) ACS Catal 10: 8835-8839

  • DOI: https://doi.org/10.1021/acscatal.0c02117
  • Primary Citation of Related Structures:  
    6ZJ4, 6ZJ7, 6ZJH, 6ZMZ, 6ZN1

  • PubMed Abstract: 

    Retaining LeLoir glycosyltransferases catalyze the formation of glycosidic bonds between nucleotide sugar donors and carbohydrate acceptors. The anomeric selectivity of trehalose transferase from Thermoproteus uzoniensis was investigated for both d- and l-glycopyranose acceptors. The enzyme couples a wide range of carbohydrates, yielding trehalose analogues with conversion and enantioselectivity of >98%. The anomeric selectivity inverts from α,α-(1 → 1)-glycosidic bonds for d-glycopyranose acceptors to α,β-(1 → 1)-glycosidic bonds for l-glycopyranose acceptors, while ( S )-selectivity was retained for both types of sugar acceptors. Comparison of protein crystal structures of trehalose transferase in complex with α,α-trehalose and an unnatural α,β-trehalose analogue highlighted the mechanistic rationale for the observed inversion of anomeric selectivity.


  • Organizational Affiliation

    Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629 HZ, Delft, The Netherlands.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Trehalose phosphorylase/synthaseA [auth AAA]400Thermoproteus uzoniensisMutation(s): 0 
Gene Names: TUZN_0976
UniProt
Find proteins for F2L613 (Thermoproteus uzoniensis (strain 768-20))
Explore F2L613 
Go to UniProtKB:  F2L613
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupF2L613
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GLC (Subject of Investigation/LOI)
Query on GLC

Download Ideal Coordinates CCD File 
I [auth AAA]alpha-D-glucopyranose
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
GIV (Subject of Investigation/LOI)
Query on GIV

Download Ideal Coordinates CCD File 
J [auth AAA]beta-L-galactopyranose
C6 H12 O6
WQZGKKKJIJFFOK-KGJVWPDLSA-N
PEG
Query on PEG

Download Ideal Coordinates CCD File 
C [auth AAA],
D [auth AAA],
E [auth AAA]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
SCN
Query on SCN

Download Ideal Coordinates CCD File 
B [auth AAA],
F [auth AAA],
G [auth AAA],
H [auth AAA]
THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.234 
  • R-Value Work: 0.202 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.01α = 90
b = 68.771β = 90
c = 110.868γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European CommissionGermanyERA-IB-15-110

Revision History  (Full details and data files)

  • Version 1.0: 2021-01-20
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Data collection, Database references, Derived calculations, Refinement description