Class D beta-lactamase from Klebsiella quasipneumoniae
Chang, C., Maltseva, N., Endres, M., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-lactamase | 257 | Klebsiella pneumoniae 700603 | Mutation(s): 0  Gene Names: oxa-2, blaOXA-2 EC: 3.5.2.6 | ![]() | |
UniProt | |||||
Find proteins for Q4LAV3 (Klebsiella pneumoniae) Explore Q4LAV3  Go to UniProtKB:  Q4LAV3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q4LAV3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NXL (Subject of Investigation/LOI) Query on NXL | E [auth A], H [auth B], N [auth C], P [auth D] | (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide C7 H13 N3 O6 S WJDGWXPPFHLLNL-RITPCOANSA-N | |||
TRS Query on TRS | O [auth C] | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C4 H12 N O3 LENZDBCJOHFCAS-UHFFFAOYSA-O | |||
PEG Query on PEG | J [auth B], K [auth B], L [auth B] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
EDO Query on EDO | F [auth A], I [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CA Query on CA | G [auth A], M [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 69.552 | α = 90 |
b = 88.669 | β = 99.15 |
c = 76.1 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
SBC-Collect | data collection |
SCALEPACK | data scaling |
PDB_EXTRACT | data extraction |
HKL-3000 | data reduction |
HKL-3000 | phasing |