5YQH

The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.198 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

The crystal structure of CYP199A4 binding with 4-n-Propyl benzoic acid

Coleman, T.Zhang, T.Qiao, R.Zhou, W.Beii, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome P450
A, B, C, D
410Rhodopseudomonas palustris HaA2Mutation(s): 0 
Gene Names: RPB_3613
UniProt
Find proteins for Q2IU02 (Rhodopseudomonas palustris (strain HaA2))
Explore Q2IU02 
Go to UniProtKB:  Q2IU02
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2IU02
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
HEM
Query on HEM

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BA [auth C],
E [auth A],
JA [auth D],
Q [auth B]
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
8ZX
Query on 8ZX

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CA [auth C]
F [auth A]
G [auth A]
H [auth A]
KA [auth D]
CA [auth C],
F [auth A],
G [auth A],
H [auth A],
KA [auth D],
R [auth B],
S [auth B],
T [auth B]
4-methoxybenzamide
C8 H9 N O2
GUCPYIYFQVTFSI-UHFFFAOYSA-N
SO4
Query on SO4

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AA [auth B]
GA [auth C]
HA [auth C]
IA [auth C]
K [auth A]
AA [auth B],
GA [auth C],
HA [auth C],
IA [auth C],
K [auth A],
L [auth A],
M [auth A],
N [auth A],
O [auth A],
OA [auth D],
P [auth A],
X [auth B],
Y [auth B],
Z [auth B]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
GOL
Query on GOL

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EA [auth C]
FA [auth C]
J [auth A]
MA [auth D]
NA [auth D]
EA [auth C],
FA [auth C],
J [auth A],
MA [auth D],
NA [auth D],
V [auth B],
W [auth B]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL
Query on CL

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DA [auth C],
I [auth A],
LA [auth D],
U [auth B]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.198 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 105.928α = 90
b = 143.242β = 90
c = 171.889γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-02-27
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Derived calculations, Refinement description