Discovery of new non-covalent ubiquitin binding sites on UbcH5
Middleton, A.J., Wright, J.D., Day, C.L.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin-conjugating enzyme E2 D2 | 152 | Homo sapiens | Mutation(s): 4  Gene Names: UBE2D2, PUBC1, UBC4, UBC5B, UBCH4, UBCH5B EC: 2.3.2.23 (PDB Primary Data), 2.3.2.24 (PDB Primary Data) | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62837 (Homo sapiens) Explore P62837  Go to UniProtKB:  P62837 | |||||
PHAROS:  P62837 GTEx:  ENSG00000131508  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62837 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin | 76 | Homo sapiens | Mutation(s): 0  Gene Names: UBB | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG47 (Homo sapiens) Explore P0CG47  Go to UniProtKB:  P0CG47 | |||||
PHAROS:  P0CG47 GTEx:  ENSG00000170315  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CG47 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase RNF165 | 92 | Homo sapiens | Mutation(s): 1  Gene Names: RNF165 EC: 2.3.2.27 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6ZSG1 (Homo sapiens) Explore Q6ZSG1  Go to UniProtKB:  Q6ZSG1 | |||||
PHAROS:  Q6ZSG1 GTEx:  ENSG00000141622  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6ZSG1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ZN Query on ZN | H [auth C], I [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
SCN Query on SCN | F [auth A], G [auth B] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 58.278 | α = 90 |
b = 60.081 | β = 90 |
c = 112.339 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
SCALA | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |