How Zika virus NS3 helicase grips the first nucleotide of the leading RNA strand
Jenkins, H.T., Ge, M., Chechik, M., Greive, S.J., Antson, A.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Genome polyprotein | 451 | Zika virus | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A146CJH9 (Zika virus) Explore A0A146CJH9  Go to UniProtKB:  A0A146CJH9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A146CJH9 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (5'-R(P*AP*GP*AP*CP*U)-3') | 9 | Zika virus | |||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FLC Query on FLC | D [auth A] | CITRATE ANION C6 H5 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-K | |||
ACT Query on ACT | C [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 52.355 | α = 90 |
b = 73.037 | β = 93.97 |
c = 58.696 | γ = 90 |
Software Name | Purpose |
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XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XSCALE | data reduction |
XDS | data scaling |
Funding Organization | Location | Grant Number |
---|---|---|
Wellcome Trust | United Kingdom | WT098230 |
Wellcome Trust | United Kingdom | WT101528 |