5KZT

Listeria monocytogenes OppA bound to peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.205 
  • R-Value Work: 0.167 
  • R-Value Observed: 0.169 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peptide/nickel transport system substrate-binding protein
A, B
536Listeria monocytogenes 10403SMutation(s): 0 
Gene Names: LMRG_01636
UniProt
Find proteins for A0A0H3GJB6 (Listeria monocytogenes serotype 1/2a (strain 10403S))
Explore A0A0H3GJB6 
Go to UniProtKB:  A0A0H3GJB6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0H3GJB6
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Hexamer peptide: SER-ASP-GLU-SER-LYS-GLY6Escherichia coliMutation(s): 0 
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Hexamer peptide: SER-ASP-GLU-SER-SER-GLY6Escherichia coliMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 100.277α = 90
b = 74.63β = 109.38
c = 155.061γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2016-08-10
    Type: Initial release
  • Version 1.1: 2017-09-27
    Changes: Data collection, Derived calculations
  • Version 1.2: 2023-10-04
    Changes: Data collection, Database references, Refinement description