5J12

Structure of human TSLP:TSLPR in complex with mouse IL-7Ralpha


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.55 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.214 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Structure of human TSLP:TSLPR in complex with mouse IL-7Ralpha

Verstraete, K.Savvides, S.N.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Thymic stromal lymphopoietin163Homo sapiensMutation(s): 2 
Gene Names: TSLP
UniProt & NIH Common Fund Data Resources
Find proteins for Q969D9 (Homo sapiens)
Explore Q969D9 
Go to UniProtKB:  Q969D9
PHAROS:  Q969D9
GTEx:  ENSG00000145777 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ969D9
Glycosylation
Glycosylation Sites: 1Go to GlyGen: Q969D9-1
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin-7 receptor subunit alpha223Mus musculusMutation(s): 0 
Gene Names: Il7r
UniProt
Find proteins for P16872 (Mus musculus)
Explore P16872 
Go to UniProtKB:  P16872
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16872
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cytokine receptor-like factor 2230Homo sapiensMutation(s): 0 
Gene Names: CRLF2CRL2ILXRTSLPR
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HC73 (Homo sapiens)
Explore Q9HC73 
Go to UniProtKB:  Q9HC73
PHAROS:  Q9HC73
GTEx:  ENSG00000205755 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HC73
Glycosylation
Glycosylation Sites: 2Go to GlyGen: Q9HC73-1
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.55 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.214 
  • Space Group: P 65 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 125.442α = 90
b = 125.442β = 90
c = 194.573γ = 120
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
PHASERphasing
Cootmodel building

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2018-02-28
    Changes: Source and taxonomy
  • Version 1.2: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary
  • Version 1.3: 2024-01-10
    Changes: Data collection, Database references, Refinement description, Structure summary