5DZS

1.5 Angstrom Crystal Structure of Shikimate Dehydrogenase 1 from Peptoclostridium difficile.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.163 
  • R-Value Observed: 0.165 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

1.5 Angstrom Crystal Structure of Shikimate Dehydrogenase 1 from Peptoclostridium difficile.

Minasov, G.Wawrzak, Z.Shuvalova, L.Dubrovska, I.Flores, K.Grimshaw, S.Kwon, K.Anderson, W.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Shikimate dehydrogenase (NADP(+))
A, B
276Clostridioides difficile 630Mutation(s): 0 
Gene Names: aroE1CD630_18370
EC: 1.1.1.25
UniProt
Find proteins for Q187E7 (Clostridioides difficile (strain 630))
Explore Q187E7 
Go to UniProtKB:  Q187E7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ187E7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.163 
  • R-Value Observed: 0.165 
  • Space Group: P 1
  • Diffraction Data: https://doi.org/10.18430/m35dzs
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 41.221α = 77.98
b = 47.053β = 76.44
c = 74.736γ = 89.09
Software Package:
Software NamePurpose
REFMACrefinement
BLU-MAXdata collection
HKL-3000data reduction
HKL-3000data scaling
MrBUMPphasing

Structure Validation

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Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2015-10-07
    Type: Initial release
  • Version 1.1: 2023-09-27
    Changes: Data collection, Database references, Derived calculations, Refinement description