5CIK

Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.148 
  • R-Value Observed: 0.150 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of Xaa-Pro dipeptidase from Xanthomonas campestris in citrate condition

Kumar, A.Are, V.Ghosh, B.Agrawal, U.Jamdar, S.Makde, R.D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proline dipeptidase
A, B
399Xanthomonas campestris pv. campestris str. ATCC 33913Mutation(s): 1 
Gene Names: pepQXCC2409
EC: 3.4.13.9
UniProt
Find proteins for Q8P839 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25))
Explore Q8P839 
Go to UniProtKB:  Q8P839
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8P839
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.148 
  • R-Value Observed: 0.150 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.179α = 90
b = 103.673β = 90
c = 136.063γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Cootmodel building
PHENIXmodel building
PHASERphasing
XDSdata processing
MAR345dtbdata collection

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-07-20
    Type: Initial release
  • Version 1.1: 2018-07-04
    Changes: Data collection, Derived calculations
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Refinement description