Download MendeleyCrystal structure of Geodermatophilus obscurus L-ribose isomerase
Terami, Y., Kamitori, S.To be published.
5AVP
Crystal structure of Geodermatophilus obscurus L-ribose isomerase
- PDB DOI: https://doi.org/10.2210/pdb5AVP/pdb
- Classification: ISOMERASE
- Organism(s): Geodermatophilus obscurus DSM 43160
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-06-29 Released: 2016-06-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.294
- R-Value Work: 0.246
- R-Value Observed: 0.246
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| L-ribose isomerase | 269 | Geodermatophilus obscurus DSM 43160 | Mutation(s): 0 Gene Names: Gobs_2645 EC: 5.3.1 |  | |
UniProt | |||||
Find proteins for D2S5K0 (Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / CCUG 61914 / KCC A-0152 / KCTC 9177 / NBRC 13315 / NRRL B-3577 / G-20)) Explore D2S5K0 Go to UniProtKB: D2S5K0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D2S5K0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MN Query on MN | E [auth A], F [auth B], G [auth C], H [auth D] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.294
- R-Value Work: 0.246
- R-Value Observed: 0.246
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 90.533 | α = 90 |
| b = 123.226 | β = 97.38 |
| c = 109.446 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| CrystalClear | data reduction |
| CrystalClear | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2016-06-29 Deposition Author(s): Terami, Y., Kamitori, S.
Revision History (Full details and data files)
- Version 1.0: 2016-06-29
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
