Crystallographic Trapping of a Covalently Modified Heme in a Dye-Decolorizing Peroxidase
Strittmatter, E., Piontek, K., Plattner, D.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DYE-DECOLORIZING PEROXIDASE | 446 | Auricularia auricula-judae | Mutation(s): 0  EC: 1.11.1.19 | ||
UniProt | |||||
Find proteins for I2DBY1 (Auricularia auricula-judae) Explore I2DBY1  Go to UniProtKB:  I2DBY1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I2DBY1 | ||||
Glycosylation | |||||
Glycosylation Sites: 3 | |||||
Sequence AnnotationsExpand | |||||
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Ligands 6 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | D [auth A], T [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
NAG Query on NAG | E [auth A], F [auth A], U [auth B], V [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CAC Query on CAC | G [auth A], W [auth B] | CACODYLATE ION C2 H6 As O2 OGGXGZAMXPVRFZ-UHFFFAOYSA-M | |||
GOL Query on GOL | AA [auth B] BA [auth B] CA [auth B] DA [auth B] J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
GOA Query on GOA | K [auth A] | GLYCOLIC ACID C2 H4 O3 AEMRFAOFKBGASW-UHFFFAOYSA-N | |||
FMT Query on FMT | EA [auth B], H [auth A], I [auth A], X [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 65.84 | α = 90 |
b = 46.57 | β = 100.49 |
c = 147.63 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
XDS | data scaling |
PHASER | phasing |