5UTX

Crystal structure of thioredoxin-disulfide reductase from Vibrio vulnificus CMCP6 - apo form

• PDB DOI: https://doi.org/10.2210/pdb5UTX/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Vibrio vulnificus CMCP6
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2017-02-15 Released: 2017-02-22 
• Deposition Author(s): Chang, C., Grimshaw, S., Maltseva, N., Mulligan, R., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.46 Å
• R-Value Free: 0.254 
• R-Value Work: 0.200 
• R-Value Observed: 0.202 

Starting Model: experimental

Literature

Crystal structure of thioredoxin-disulfide reductase from Vibrio vulnificus CMCP6 - apo form

Chang, C., Grimshaw, S., Maltseva, N., Mulligan, R., Anderson, W.F., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 68.96 kDa 
• Atom Count: 4,425 
• Modelled Residue Count: 580 
• Deposited Residue Count: 638 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioredoxin reductase	A, B	319	Vibrio vulnificus CMCP6	Mutation(s): 0  Gene Names: VV1455 EC: 1.8.1.9
UniProt
Find proteins for Q7MLH2 (Vibrio vulnificus (strain YJ016)) Explore Q7MLH2  Go to UniProtKB:  Q7MLH2

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	C [auth A], D [auth B]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.46 Å
• R-Value Free: 0.254 
• R-Value Work: 0.200 
• R-Value Observed: 0.202 
• Space Group: P 3₁ 2 1
• Diffraction Data: https://doi.org/10.18430/m35utx

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.031	α = 90
b = 120.031	β = 90
c = 79.185	γ = 120

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-02-22 
Deposition Author(s): Chang, C., Grimshaw, S., Maltseva, N., Mulligan, R., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2017-02-22
  Type: Initial release
  
• Version 1.1: 2017-08-23
  Changes: Data collection
• Version 1.2: 2023-10-04
  Changes: Data collection, Database references, Refinement description
• Version 1.3: 2024-10-30
  Changes: Structure summary