5URQ

Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Campylobacter jejuni in the complex with inhibitor p176


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.183 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Campylobacter jejuni in the complex with inhibitor p176

Kim, Y.Maltseva, N.Makowska-Grzyska, M.Gu, M.Gollapalli, D.Hedstrom, L.Anderson, W.F.Joachimiak, A.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Inosine-5'-monophosphate dehydrogenase406Campylobacter jejuni subsp. jejuniCampylobacter jejuni subsp. jejuni CG8486
This entity is chimeric
Mutation(s): 0 
Gene Names: guaBCJ14980A_1064Cj8486_1016
EC: 1.1.1.205
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
8L7
Query on 8L7

Download Ideal Coordinates CCD File 
CA [auth H]
FA [auth G]
J [auth A]
N [auth B]
Q [auth C]
CA [auth H],
FA [auth G],
J [auth A],
N [auth B],
Q [auth C],
S [auth D],
V [auth E],
Z [auth F]
N-{2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenyl}-alpha-D-ribofuranosylamine
C24 H30 Cl N3 O5
RGENKIJBZZZCQP-YSFYHYPLSA-N
IMP
Query on IMP

Download Ideal Coordinates CCD File 
BA [auth H]
EA [auth G]
I [auth A]
M [auth B]
P [auth C]
BA [auth H],
EA [auth G],
I [auth A],
M [auth B],
P [auth C],
R [auth D],
U [auth E],
Y [auth F]
INOSINIC ACID
C10 H13 N4 O8 P
GRSZFWQUAKGDAV-KQYNXXCUSA-N
K
Query on K

Download Ideal Coordinates CCD File 
AA [auth F]
DA [auth G]
K [auth A]
L [auth A]
O [auth B]
AA [auth F],
DA [auth G],
K [auth A],
L [auth A],
O [auth B],
T [auth D],
W [auth E],
X [auth E]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.183 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 98.487α = 90
b = 141.793β = 94.47
c = 121.64γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2017-03-01
    Type: Initial release
  • Version 1.1: 2017-09-20
    Changes: Author supporting evidence
  • Version 1.2: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.3: 2023-10-04
    Changes: Data collection, Database references, Derived calculations, Refinement description