Structure of glutamine-dependent NAD+ synthetase from Acinetobacter baumannii in complex with adenosine diphosphate (ADP)
Abendroth, J., Delker, S.L., Lorimer, D.D., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Glutamine-dependent NAD+ synthetase | 549 | Acinetobacter baumannii | Mutation(s): 0  Gene Names:  nadE, A7A43_14755, AB895_2341, AB988_2173, ABUW_3069, ACX60_14085, APD31_16600, AQ480_16865, IOMTU433_2979, IX87_01870... EC: 6.3.5.1 (PDB Primary Data), 6.3.1.5 (PDB Primary Data) | ![]() | |
UniProt | |||||
Find proteins for V5VHL3 (Acinetobacter baumannii) Explore V5VHL3  Go to UniProtKB:  V5VHL3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | V5VHL3 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP Query on ADP | C [auth A], F [auth B] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
EDO Query on EDO | D [auth A], G [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A], H [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 71.88 | α = 90 |
b = 123.75 | β = 110.93 |
c = 73.65 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
XSCALE | data scaling |
MOLREP | phasing |
PDB_EXTRACT | data extraction |
PHENIX | model building |
PHENIX | refinement |
Coot | model building |