5ICR

2.25 Angstrom Resolution Crystal Structure of Fatty-Acid-CoA Ligase (FadD32) from Mycobacterium smegmatis in complex with Inhibitor 5'-O-[(11-phenoxyundecanoyl)sulfamoyl]adenosine.

• PDB DOI: https://doi.org/10.2210/pdb5ICR/pdb

• Classification: LIGASE/LIGASE INHIBITOR
• Organism(s): Mycolicibacterium smegmatis MC2 155
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2016-02-23 Released: 2016-04-06 
• Deposition Author(s): Minasov, G., Shuvalova, L., Hung, D., Fisher, S.L., Edelstein, J., Kiryukhina, O., Dubrovska, I., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.25 Å
• R-Value Free: 0.219 
• R-Value Work: 0.173 
• R-Value Observed: 0.175 

Starting Model: experimental

Literature

2.25 Angstrom Resolution Crystal Structure of Fatty-Acid-CoA Ligase (FadD32) from Mycobacterium smegmatis in complex with Inhibitor 5'-O-[(11-phenoxyundecanoyl)sulfamoyl]adenosine.

Minasov, G., Shuvalova, L., Hung, D., Fisher, S.L., Edelstein, J., Kiryukhina, O., Dubrovska, I., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Macromolecule Content

• Total Structure Weight: 284.95 kDa 
• Atom Count: 20,342 
• Modelled Residue Count: 2,443 
• Deposited Residue Count: 2,600 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl-CoA synthase	A, B, C, D	650	Mycolicibacterium smegmatis MC2 155	Mutation(s): 0  Gene Names: fadD32, MSMEG_6393, MSMEI_6225
UniProt
Find proteins for A0R618 (Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)) Explore A0R618  Go to UniProtKB:  A0R618

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
649	E [auth A], H [auth B], K [auth C], N [auth D]	5'-O-[(11-phenoxyundecanoyl)sulfamoyl]adenosine C27 H38 N6 O8 S VLRIGNDIFPKPGQ-ZCIWVVNKSA-N
SO4	F [auth A], G [auth A], J [auth B], L [auth C], O [auth D]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	M [auth C]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL	I [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.25 Å
• R-Value Free: 0.219 
• R-Value Work: 0.173 
• R-Value Observed: 0.175 
• Space Group: P 2₁ 2₁ 2₁
• Diffraction Data: https://doi.org/10.18430/m35icr

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.294	α = 90
b = 153.561	β = 90
c = 201.253	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-04-06 
Deposition Author(s): Minasov, G., Shuvalova, L., Hung, D., Fisher, S.L., Edelstein, J., Kiryukhina, O., Dubrovska, I., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2016-04-06
  Type: Initial release
  
• Version 1.1: 2023-09-27
  Changes: Data collection, Database references, Derived calculations, Refinement description