Download MendeleySecreted Internalin-like protein Lmo2445 from Listeria monocytogenes
Light, S.H., Minasov, G., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)To be published.
5HZL
Secreted Internalin-like protein Lmo2445 from Listeria monocytogenes
- PDB DOI: https://doi.org/10.2210/pdb5HZL/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Listeria monocytogenes EGD-e
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2016-02-02 Released: 2016-02-17
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.75 Å
- R-Value Free: 0.226
- R-Value Work: 0.192
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lmo2445 protein | A [auth B] | 303 | Listeria monocytogenes EGD-e | Mutation(s): 0 Gene Names: lmo2445 |  |
UniProt | |||||
Find proteins for Q8Y4J3 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q8Y4J3 Go to UniProtKB: Q8Y4J3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8Y4J3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG5 Query on PG5 | I [auth B] | 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE C8 H18 O4 YFNKIDBQEZZDLK-UHFFFAOYSA-N |  | ||
| CA Query on CA | B C [auth B] D [auth B] E [auth B] F [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A [auth B] | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.75 Å
- R-Value Free: 0.226
- R-Value Work: 0.192
- R-Value Observed: 0.193
- Space Group: P 31 2 1
- Diffraction Data: https://doi.org/10.18430/m35hzl
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 120.35 | α = 90 |
| b = 120.35 | β = 90 |
| c = 62.286 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History
Deposition Data
- Released Date: 2016-02-17 Deposition Author(s): Light, S.H., Minasov, G., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2016-02-17
Type: Initial release - Version 1.1: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary
