Structure function studies of R. palustris RubisCO.
Arbing, M.A., Satagopan, S., Varaljay, V.A., Tabita, F.R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ribulose bisphosphate carboxylase (R. palustris/R. rubrum chimera),Ribulose bisphosphate carboxylase | 487 | Rhodopseudomonas palustris, Rhodospirillum rubrum This entity is chimeric | Mutation(s): 0  EC: 4.1.1.39 | ||
UniProt | |||||
Find proteins for P04718 (Rhodospirillum rubrum) Explore P04718  Go to UniProtKB:  P04718 | |||||
Find proteins for Q6N0W9 (Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)) Explore Q6N0W9  Go to UniProtKB:  Q6N0W9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | Q6N0W9P04718 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CAP Query on CAP | C [auth A], F [auth B] | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE C6 H14 O13 P2 ITHCSGCUQDMYAI-ZMIZWQJLSA-N | |||
K Query on K | E [auth A], H [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | |||
MG Query on MG | D [auth A], G [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
KCX Query on KCX | A, B | L-PEPTIDE LINKING | C7 H14 N2 O4 | LYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 165.12 | α = 90 |
b = 165.12 | β = 90 |
c = 95.23 | γ = 120 |
Software Name | Purpose |
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XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
Coot | model building |
BUSTER-TNT | refinement |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM095742 |
Department of Energy (DOE, United States) | United States | DE-FC02-02ER63421 |