Download MendeleyStructural basis for substrate binding and catalysis of branching enzyme from Cyanothece sp. ATCC 51142
Hayashi, M., Suzuki, R., Colleoni, C., Ball, S.G., Fujita, N., Suzuki, E.To be published.
5GR5
Crystal structure of branching enzyme W610A mutant from Cyanothece sp. ATCC 51142
- PDB DOI: https://doi.org/10.2210/pdb5GR5/pdb
- Classification: TRANSFERASE
- Organism(s): Crocosphaera subtropica ATCC 51142
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2016-08-08 Released: 2017-08-16
- Funding Organization(s): Shimadzu Science Foundation, JSPS KAKENHI
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.187
- R-Value Work: 0.151
- R-Value Observed: 0.153
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 1,4-alpha-glucan branching enzyme GlgB | 793 | Crocosphaera subtropica ATCC 51142 | Mutation(s): 1 Gene Names: glgB, glgB1, cce_2248 EC: 2.4.1.18 |  | |
UniProt | |||||
Find proteins for B1WPM8 (Crocosphaera subtropica (strain ATCC 51142 / BH68)) Explore B1WPM8 Go to UniProtKB: B1WPM8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B1WPM8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B [auth A], C [auth A], D [auth A], E [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| MG Query on MG | F [auth A], G [auth A], H [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.187
- R-Value Work: 0.151
- R-Value Observed: 0.153
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 133.87 | α = 90 |
| b = 133.87 | β = 90 |
| c = 185.01 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2017-08-16 Deposition Author(s): Suzuki, R., Suzuki, E.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Shimadzu Science Foundation | Japan | 120003 |
| JSPS KAKENHI | Japan | 15K18685 |
| JSPS KAKENHI | Japan | 25440193 |
Revision History (Full details and data files)
- Version 1.0: 2017-08-16
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
