Download MendeleyCrystal structure of four variants of the protease Ficin from the common fig
Baldacci-Cresp, F., Rodriguez Buitrago, J.A., M'Rabet, N., Loris, R., Baucher, M., Baeyens-Volant, D., Azarkan, M.To be published.
4YYW
Ficin D2
- PDB DOI: https://doi.org/10.2210/pdb4YYW/pdb
- Classification: HYDROLASE
- Organism(s): Ficus carica
- Mutation(s): No
- Deposited: 2015-03-24 Released: 2016-04-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.197
- R-Value Work: 0.169
- R-Value Observed: 0.170
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ficin isoform D | 220 | Ficus carica | Mutation(s): 0 EC: 3.4.22.3 |  | |
UniProt | |||||
Find proteins for A0A182DW11 (Ficus carica) Explore A0A182DW11 Go to UniProtKB: A0A182DW11 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A182DW11 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| SCH Query on SCH | A | L-PEPTIDE LINKING | C4 H9 N O2 S2 |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.197
- R-Value Work: 0.169
- R-Value Observed: 0.170
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.017 | α = 90 |
| b = 52.414 | β = 101.34 |
| c = 64.364 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-04-13 Deposition Author(s): Azarkan, M., Baeyens-Volant, D., Loris, R.
Revision History (Full details and data files)
- Version 1.0: 2016-04-13
Type: Initial release - Version 2.0: 2024-01-10
Changes: Atomic model, Data collection, Database references, Derived calculations, Refinement description
