Download MendeleyGlycine Substitution of Surface Proline 287 Involves Entropic Enhancement of Bacillus sp. TB-90 Uricase Activity
Hibi, T., Hayashi, Y., Kawamura, A., Itoh, T., Fukada, H., Kishimoto, T., Nishiya, Y.To be published.
4XFP
Crystal Structure of Highly Active Mutant of Bacillus sp. TB-90 Urate Oxidase
- PDB DOI: https://doi.org/10.2210/pdb4XFP/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Bacillus sp. TB-90
- Expression System: Escherichia coli DH5[alpha]
- Mutation(s): Yes
- Deposited: 2014-12-28 Released: 2016-01-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.184
- R-Value Work: 0.156
- R-Value Observed: 0.157
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Urate oxidase | 317 | Bacillus sp. TB-90 | Mutation(s): 1 Gene Names: uao EC: 1.7.3.3 (PDB Primary Data), 4.1.1.97 (UniProt) |  | |
UniProt | |||||
Find proteins for Q45697 (Bacillus sp. (strain TB-90)) Explore Q45697 Go to UniProtKB: Q45697 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q45697 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AZA Query on AZA | E [auth A], H [auth B], J [auth C], M [auth D] | 8-AZAXANTHINE C4 H3 N5 O2 KVGVQTOQSNJTJI-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | G [auth A], L [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| CL Query on CL | F [auth A], I [auth B], K [auth C], N [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.66 Å
- R-Value Free: 0.184
- R-Value Work: 0.156
- R-Value Observed: 0.157
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 134.135 | α = 90 |
| b = 145.195 | β = 90 |
| c = 71.141 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| SCALEPACK | data reduction |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2016-01-13 Deposition Author(s): Hibi, T., Hayashi, Y., Kawamura, A., Itoh, T.
Revision History (Full details and data files)
- Version 1.0: 2016-01-13
Type: Initial release - Version 1.1: 2020-02-05
Changes: Data collection, Derived calculations - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description
