Crystal structure of Nef134-8(wt) epitope presented by HLA-A24
Shimizu, A., Yamagata, A., Fukai, S., Iwamoto, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HLA class I histocompatibility antigen, A-24 alpha chain | 275 | Homo sapiens | Mutation(s): 0  Gene Names: HLA-A, HLAA | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04439 (Homo sapiens) Explore P04439  Go to UniProtKB:  P04439 | |||||
PHAROS:  P04439 GTEx:  ENSG00000206503  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04439 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 100 | Homo sapiens | Mutation(s): 0  Gene Names: B2M, CDABP0092, HDCMA22P | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769 | |||||
PHAROS:  P61769 GTEx:  ENSG00000166710  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
8-Mer peptide from Protein Nef | 8 | Human immunodeficiency virus 1 | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P04601 (Human immunodeficiency virus type 1 group M subtype B (isolate HXB2)) Explore P04601  Go to UniProtKB:  P04601 | |||||
Entity Groups   | |||||
UniProt Group | P04601 | ||||
Sequence AnnotationsExpand | |||||
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Length ( Å ) | Angle ( ˚ ) |
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a = 57.687 | α = 90 |
b = 67.07 | β = 99.01 |
c = 117.727 | γ = 90 |
Software Name | Purpose |
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SCALA | data reduction |
MOLREP | model building |
REFMAC | refinement |
PDB_EXTRACT | data extraction |