4OHS

The structure of a far-red fluorescent protein, AQ143


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.191 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The structure of a far-red fluorescent protein, AQ143, shows evidence in support of reported red-shifting chromophore interactions.

Wannier, T.M.Mayo, S.L.

(2014) Protein Sci 23: 1148-1153

  • DOI: https://doi.org/10.1002/pro.2498
  • Primary Citation of Related Structures:  
    4OHS

  • PubMed Abstract: 

    Engineering fluorescent proteins (FPs) to emit light at longer wavelengths is a significant focus in the development of the next generation of fluorescent biomarkers, as far-red light penetrates tissue with minimal absorption, allowing better imaging inside of biological hosts. Structure-guided design and directed evolution have led to the discovery of red FPs with significant bathochromic shifts to their emission. Here, we present the crystal structure of one of the most bathochromically shifted FPs reported to date, AQ143, a nine-point mutant of aeCP597, a chromoprotein from Actinia equina. The 2.19 Å resolution structure reveals several important chromophore interactions that contribute to the protein's far-red emission and shows dual occupancy of the green and red chromophores.


  • Organizational Affiliation

    Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, 91125.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
FAR-RED FLUORESCENT PROTEIN AQ143
A, B, C, D, E
A, B, C, D, E, F, G, H
237Actinia equinaMutation(s): 0 
UniProt
Find proteins for Q2VFP3 (Actinia equina)
Explore Q2VFP3 
Go to UniProtKB:  Q2VFP3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2VFP3
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
CH6
Query on CH6
A, B, C, D, E
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC16 H19 N3 O4 SMET, TYR, GLY
NRQ
Query on NRQ
A, B, C, D, E
A, B, C, D, E, F, G, H
L-PEPTIDE LINKINGC16 H17 N3 O4 SMET, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.221 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.191 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.967α = 98.38
b = 68.114β = 90.74
c = 132.788γ = 110.47
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-02-26
    Type: Initial release
  • Version 1.1: 2014-07-02
    Changes: Database references
  • Version 1.2: 2014-08-06
    Changes: Database references