4NQJ

Structure of coiled-coil domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.218 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Structural insights into the TRIM family of ubiquitin E3 ligases.

Li, Y.Wu, H.Wu, W.Zhuo, W.Liu, W.Zhang, Y.Cheng, M.Chen, Y.G.Gao, N.Yu, H.Wang, L.Li, W.Yang, M.

(2014) Cell Res 24: 762-765

  • DOI: https://doi.org/10.1038/cr.2014.46
  • Primary Citation of Related Structures:  
    4NQJ

  • Organizational Affiliation

    1] MOE Key Laboratory of Protein Sciences, Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China [2] Department of Pharmacology and Pharmaceutical Sciences, School of Medicine, Tsinghua University, Beijing 100084, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
E3 ubiquitin-protein ligase TRIM69
A, B, C
179Homo sapiensMutation(s): 0 
Gene Names: TRIM69
EC: 6.3.2
UniProt & NIH Common Fund Data Resources
Find proteins for Q86WT6 (Homo sapiens)
Explore Q86WT6 
Go to UniProtKB:  Q86WT6
PHAROS:  Q86WT6
GTEx:  ENSG00000185880 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86WT6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.216 
  • R-Value Observed: 0.218 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.097α = 90
b = 101.064β = 90
c = 233.252γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
SHELXSphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-05-21
    Type: Initial release
  • Version 1.1: 2022-08-24
    Changes: Database references, Derived calculations
  • Version 1.2: 2024-04-03
    Changes: Data collection, Refinement description