Exploring a Multivalent Approach to alpha-L-Fucosidase Inhibition
Moreno-Clavijo, E., Carmona, A.T., Moreno-Varga, A.J., Molina, L., Wright, D.W., Davies, G.J., Robina, I.(2013) European J Org Chem 2013: 7328-7336
Experimental Data Snapshot
Starting Model: experimental
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(2013) European J Org Chem 2013: 7328-7336
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
alpha-L-fucosidase | 450 | Bacteroides thetaiotaomicron VPI-5482 | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for Q8A3I4 (Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50)) Explore Q8A3I4  Go to UniProtKB:  Q8A3I4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8A3I4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
LM5 Query on LM5 | C [auth A], K [auth B] | (3S,4R,5S)-N-benzyl-3,4-dihydroxy-5-methyl-D-prolinamide C13 H18 N2 O3 RJAKCSBNEIOVPB-GMNPVEAJSA-N | |||
SO4 Query on SO4 | G [auth A], H [auth A], I [auth A], Q [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
IMD Query on IMD | D [auth A] E [auth A] F [auth A] L [auth B] M [auth B] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 67.52 | α = 90 |
b = 95.35 | β = 90.13 |
c = 97.16 | γ = 90 |
Software Name | Purpose |
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SCALA | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
MOSFLM | data reduction |
REFMAC | phasing |