Structure of nucleoside diphosphate kinase (NDK) from Burkholderia thailandensis bound to ADP
Clifton, M.C., Abendroth, J.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nucleoside diphosphate kinase | 145 | Burkholderia thailandensis E264 | Mutation(s): 0  Gene Names: ndk, BTH_I2231 EC: 2.7.4.6 | ||
UniProt | |||||
Find proteins for Q2SWE7 (Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)) Explore Q2SWE7  Go to UniProtKB:  Q2SWE7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q2SWE7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP Query on ADP | C [auth A], D [auth B] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 91.24 | α = 90 |
b = 91.24 | β = 90 |
c = 90.19 | γ = 90 |
Software Name | Purpose |
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XSCALE | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |