Crystal structure of orotidine 5'-monophosphate decarboxylase from Thermoproteus neutrophilus
Fedorov, A.A., Fedorov, E.V., Desai, B., Gerlt, J.A., Almo, S.C.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Orotidine 5'-phosphate decarboxylase | 202 | Pyrobaculum neutrophilum V24Sta | Mutation(s): 0  Gene Names: Tneu_0023 | ||
UniProt | |||||
Find proteins for B1Y9Q9 (Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / NBRC 100436 / V24Sta)) Explore B1Y9Q9  Go to UniProtKB:  B1Y9Q9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B1Y9Q9 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | D [auth A], G [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
NI Query on NI | C [auth A], F [auth B] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 171.61 | α = 90 |
b = 171.61 | β = 90 |
c = 171.61 | γ = 90 |
Software Name | Purpose |
---|---|
CBASS | data collection |
PHENIX | model building |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-3000 | data scaling |
PHENIX | phasing |