Crystal Structure of the N-terminal Domain of Human Ubiquitin Specific Protease 38
Shen, L., Dong, A., Hu, J., Li, Y., Tempel, W., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin carboxyl-terminal hydrolase 38 | 430 | Homo sapiens | Mutation(s): 0  Gene Names: USP38, KIAA1891 EC: 3.4.19.12 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q8NB14 (Homo sapiens) Explore Q8NB14  Go to UniProtKB:  Q8NB14 | |||||
PHAROS:  Q8NB14 GTEx:  ENSG00000170185  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8NB14 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | B [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
UNX Query on UNX | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A] | UNKNOWN ATOM OR ION X |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 41.985 | α = 90 |
b = 102.039 | β = 90 |
c = 135.281 | γ = 90 |
Software Name | Purpose |
---|---|
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
SBC-Collect | data collection |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
SOLVE | phasing |
RESOLVE | phasing |