4R7R

Crystal Structure of Putative Lipoprotein from Clostridium perfringens

• PDB DOI: https://doi.org/10.2210/pdb4R7R/pdb

• Classification: LIPID BINDING PROTEIN
• Organism(s): Clostridium perfringens ATCC 13124
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2014-08-28 Released: 2014-09-10 
• Deposition Author(s): Kim, Y., Zhou, M., Shatsman, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free: 0.238 
• R-Value Work: 0.185 
• R-Value Observed: 0.188 

Literature

Crystal Structure of Putative Lipoprotein from Clostridium perfringens

Kim, Y., Zhou, M., Shatsman, S., Anderson, W.F., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 15.21 kDa 
• Atom Count: 1,052 
• Modelled Residue Count: 122 
• Deposited Residue Count: 128 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative lipoprotein	A	128	Clostridium perfringens ATCC 13124	Mutation(s): 0  Gene Names: CPF_1278
UniProt
Find proteins for A0A0H2YS77 (Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 8237 / Type A)) Explore A0A0H2YS77  Go to UniProtKB:  A0A0H2YS77

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	B [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.45 Å
• R-Value Free: 0.238 
• R-Value Work: 0.185 
• R-Value Observed: 0.188 
• Space Group: P 3₂ 2 1
• Diffraction Data: https://doi.org/10.18430/m34r7r

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.743	α = 90
b = 58.743	β = 90
c = 85.984	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	data collection
HKL-3000	phasing
PHENIX	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-09-10 
Deposition Author(s): Kim, Y., Zhou, M., Shatsman, S., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2014-09-10
  Type: Initial release