4NLM

1.18 Angstrom resolution crystal structure of uncharacterized protein lmo1340 from Listeria monocytogenes EGD-e

• PDB DOI: https://doi.org/10.2210/pdb4NLM/pdb

• Classification: Structural genomics, Unknown function
• Organism(s): Listeria monocytogenes EGD-e
• Expression System: Micromonospora sp. 47TW
• Mutation(s): No 


• Deposited: 2013-11-14 Released: 2013-12-18 
• Deposition Author(s): Halavaty, A.S., Minasov, G., Dubrovska, I., Winsor, J., Shuvalova, L., Grimshaw, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.18 Å
• R-Value Free: 0.181 
• R-Value Work: 0.145 
• R-Value Observed: 0.147 

Literature

1.18 Angstrom resolution crystal structure of uncharacterized protein lmo1340 from Listeria monocytogenes EGD-e

Halavaty, A.S., Minasov, G., Dubrovska, I., Winsor, J., Shuvalova, L., Grimshaw, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 42.22 kDa 
• Atom Count: 3,431 
• Modelled Residue Count: 326 
• Deposited Residue Count: 363 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lmo1340 protein	A	363	Listeria monocytogenes EGD-e	Mutation(s): 0  Gene Names: lmo1340
UniProt
Find proteins for Q8Y7E3 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q8Y7E3  Go to UniProtKB:  Q8Y7E3

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.18 Å
• R-Value Free: 0.181 
• R-Value Work: 0.145 
• R-Value Observed: 0.147 
• Space Group: P 1 2₁ 1
• Diffraction Data: https://doi.org/10.18430/m34nlm

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.224	α = 90
b = 69.99	β = 95.61
c = 52.905	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
MLPHARE	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-12-18 
Deposition Author(s): Halavaty, A.S., Minasov, G., Dubrovska, I., Winsor, J., Shuvalova, L., Grimshaw, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2013-12-18
  Type: Initial release
  
• Version 1.1: 2017-11-22
  Changes: Refinement description
• Version 1.2: 2024-11-06
  Changes: Data collection, Database references, Derived calculations, Structure summary