Structural evidence for the semiquinone in a copper amine oxidase from Hansenula polymorpha: implications for the catalytic mechanism
Johnson, B.J., Yukl, E.T., Klema, V.J., Klinman, J.P., Wilmot, C.M.(2013) J Biol Chem 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2013) J Biol Chem 
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Peroxisomal primary amine oxidase | 692 | Ogataea angusta | Mutation(s): 0  Gene Names: AMO EC: 1.4.3.21 | ![]() | |
UniProt | |||||
Find proteins for P12807 (Pichia angusta) Explore P12807  Go to UniProtKB:  P12807 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12807 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | DA [auth B], MA [auth C], QB [auth F] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
GOL Query on GOL | AA [auth B] AB [auth D] BA [auth B] CA [auth B] DB [auth E] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CU Query on CU | BB [auth E] FA [auth C] G [auth A] JB [auth F] QA [auth D] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
PEO Query on PEO | CB [auth E] GA [auth C] H [auth A] KB [auth F] RA [auth D] | HYDROGEN PEROXIDE H2 O2 MHAJPDPJQMAIIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
TYY Query on TYY | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C9 H10 N2 O4 | TYR |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 103.577 | α = 90 |
b = 222.836 | β = 95.87 |
c = 103.619 | γ = 90 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
REFMAC | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |