4IV5

X-ray crystal structure of a putative aspartate carbamoyltransferase from Trypanosoma cruzi


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.194 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

X-ray crystal structure of a putative aspartate carbamoyltransferase from Trypanosoma cruzi

Fairman, J.W.Abendroth, J.A.Edwards, T.E.Lorimer, D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aspartate carbamoyltransferase, putative
A, B, C, D, E
A, B, C, D, E, F
334Trypanosoma cruzi strain CL BrenerMutation(s): 0 
Gene Names: Tc00.1047053508375.30Tc00.1047053511923.110
EC: 2.1.3.2
UniProt
Find proteins for Q4D3W3 (Trypanosoma cruzi (strain CL Brener))
Explore Q4D3W3 
Go to UniProtKB:  Q4D3W3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4D3W3
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download Ideal Coordinates CCD File 
G [auth A]
J [auth B]
L [auth C]
P [auth D]
Q [auth E]
G [auth A],
J [auth B],
L [auth C],
P [auth D],
Q [auth E],
V [auth F]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
EDO
Query on EDO

Download Ideal Coordinates CCD File 
R [auth E]1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
UNX
Query on UNX

Download Ideal Coordinates CCD File 
H [auth A]
I [auth A]
K [auth B]
M [auth C]
N [auth C]
H [auth A],
I [auth A],
K [auth B],
M [auth C],
N [auth C],
O [auth C],
S [auth E],
T [auth E],
U [auth E],
W [auth F],
X [auth F]
UNKNOWN ATOM OR ION
X
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.194 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 83.98α = 90
b = 134.55β = 90
c = 159.46γ = 90
Software Package:
Software NamePurpose
XSCALEdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-04-10
    Type: Initial release
  • Version 1.1: 2023-09-20
    Changes: Data collection, Database references, Derived calculations, Refinement description