The structures of Escherichia coli exonuclease I in complex with the single strand DNA
Qiu, R., Lou, T., Wei, J., Liu, M., Gu, S., Tang, R., Ji, C., Gong, W.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Exodeoxyribonuclease I | 481 | Escherichia coli DH5[alpha] | Mutation(s): 0  Gene Names: b2011, cpeA, JW1993, sbcB, xonA EC: 3.1.11.1 | ||
UniProt | |||||
Find proteins for P04995 (Escherichia coli (strain K12)) Explore P04995  Go to UniProtKB:  P04995 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04995 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | E [auth A] F [auth A] G [auth A] J [auth B] K [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
PO4 Query on PO4 | Q [auth C], R [auth D] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
ZN Query on ZN | H [auth A], N [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
IPA Query on IPA | I [auth A], O [auth B], P [auth B] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 63.037 | α = 90 |
b = 108.692 | β = 90 |
c = 158.403 | γ = 90 |
Software Name | Purpose |
---|---|
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
PHASES | phasing |