4FR4

Crystal structure of human serine/threonine-protein kinase 32A (YANK1)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.206 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Serine/threonine-protein kinase 32A
A, B, C, D, E
A, B, C, D, E, F
384Homo sapiensMutation(s): 0 
Gene Names: STK32A
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WU08 (Homo sapiens)
Explore Q8WU08 
Go to UniProtKB:  Q8WU08
PHAROS:  Q8WU08
GTEx:  ENSG00000169302 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8WU08
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
STU
Query on STU

Download Ideal Coordinates CCD File 
G [auth A]
I [auth B]
L [auth C]
P [auth D]
Q [auth E]
G [auth A],
I [auth B],
L [auth C],
P [auth D],
Q [auth E],
S [auth F]
STAUROSPORINE
C28 H26 N4 O3
HKSZLNNOFSGOKW-FYTWVXJKSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
H [auth A]
J [auth B]
K [auth B]
M [auth C]
N [auth C]
H [auth A],
J [auth B],
K [auth B],
M [auth C],
N [auth C],
O [auth C],
R [auth E],
T [auth F]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.206 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 154.11α = 90
b = 154.11β = 90
c = 112.11γ = 120
Software Package:
Software NamePurpose
GDAdata collection
PHASERphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2012-07-18
    Type: Initial release
  • Version 1.1: 2023-09-13
    Changes: Data collection, Database references, Derived calculations, Refinement description