Crystal Structure of a Complex between Actinomadura R39 Dd-Peptidase and a Boronate Inhibitor
Sauvage, E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
D-ALANYL-D-ALANINE CARBOXYPEPTIDASE | 466 | Actinomadura sp. R39 | Mutation(s): 0  EC: 3.4.16.4 | ||
UniProt | |||||
Find proteins for P39045 (Actinomadura sp. (strain R39)) Explore P39045  Go to UniProtKB:  P39045 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P39045 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HQZ Query on HQZ | BA [auth D], E [auth A], N [auth B], U [auth C] | trihydroxy{(1S)-1-[(methylsulfonyl)amino]ethyl}borate(1-) C3 H11 B N O5 S ZTYRBLZCLIYDCR-GSVOUGTGSA-N | |||
SO4 Query on SO4 | AA [auth C] CA [auth D] DA [auth D] EA [auth D] F [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
MG Query on MG | GA [auth D], HA [auth D], J [auth A], K [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 102.332 | α = 90 |
b = 92.113 | β = 95.9 |
c = 105.957 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
MOSFLM | data reduction |
SCALA | data scaling |