3RP9

Crystal Structure of the apo MapK from Toxoplasma Gondii, 25.m01780 or TGME49_007820

• PDB DOI: https://doi.org/10.2210/pdb3RP9/pdb

• Classification: TRANSFERASE
• Organism(s): Toxoplasma gondii ME49
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2011-04-26 Released: 2011-06-15 
• Deposition Author(s): Wernimont, A.K., Crombet, L., Pizarro, J.C., Crowther, G.J., Van Voorhis, W.C., Arrowsmith, C.H., Bountra, C., Weigelt, J., Edwards, A.M., Hui, R., Lin, Y.H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.237 
• R-Value Work: 0.201 
• R-Value Observed: 0.203 

Starting Model: experimental

Literature

Crystal Structure of the apo MapK from Toxoplasma Gondii, 25.m01780 or TGME49_007820

Wernimont, A.K., Crombet, L., Pizarro, J.C., Crowther, G.J., Van Voorhis, W.C., Arrowsmith, C.H., Bountra, C., Weigelt, J., Edwards, A.M., Hui, R., Lin, Y.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 52.83 kDa 
• Atom Count: 2,936 
• Modelled Residue Count: 350 
• Deposited Residue Count: 458 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitogen-activated protein kinase	A	458	Toxoplasma gondii ME49	Mutation(s): 0  Gene Names: 25.m01780, TGME49_007820 EC: 2.7.11.24
UniProt
Find proteins for B6KP12 (Toxoplasma gondii (strain ATCC 50861 / VEG)) Explore B6KP12  Go to UniProtKB:  B6KP12

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.237 
• R-Value Work: 0.201 
• R-Value Observed: 0.203 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.508	α = 90
b = 97.454	β = 104.92
c = 48.374	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-06-15 
Deposition Author(s): Wernimont, A.K., Crombet, L., Pizarro, J.C., Crowther, G.J., Van Voorhis, W.C., Arrowsmith, C.H., Bountra, C., Weigelt, J., Edwards, A.M., Hui, R., Lin, Y.H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2011-06-15
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-08
  Changes: Refinement description
• Version 1.3: 2023-09-13
  Changes: Data collection, Database references, Derived calculations, Refinement description