The bindingmode of HIV-1 protease inhibitors to pepsin-like aspartic proteinases
Koester, H., Heine, A., Klebe, G.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Candidapepsin-2 | 342 | Candida albicans | Mutation(s): 0  EC: 3.4.23.24 | ||
UniProt | |||||
Find proteins for P0CS83 (Candida albicans) Explore P0CS83  Go to UniProtKB:  P0CS83 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CS83 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RIT Query on RIT | B [auth A] | RITONAVIR C37 H48 N6 O5 S2 NCDNCNXCDXHOMX-XGKFQTDJSA-N | |||
MRD Query on MRD | E [auth A] | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N | |||
ZN Query on ZN | C [auth A], D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_001001 (RIT) Query on PRD_001001 | B [auth A] | RITONAVIR | Peptide-like / Inhibitor |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.28 | α = 90 |
b = 65.46 | β = 90 |
c = 98.45 | γ = 90 |
Software Name | Purpose |
---|---|
MAR345dtb | data collection |
PHASER | phasing |
SHELXL-97 | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |