3PVA

PENICILLIN V ACYLASE FROM B. SPHAERICUS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.211 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Penicillin V acylase crystal structure reveals new Ntn-hydrolase family members.

Suresh, C.G.Pundle, A.V.SivaRaman, H.Rao, K.N.Brannigan, J.A.McVey, C.E.Verma, C.S.Dauter, Z.Dodson, E.J.Dodson, G.G.

(1999) Nat Struct Biol 6: 414-416


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN (PENICILLIN V ACYLASE)
A, B, C, D, E
A, B, C, D, E, F, G, H
335Lysinibacillus sphaericusMutation(s): 0 
EC: 3.5.1.11
UniProt
Find proteins for P12256 (Lysinibacillus sphaericus)
Explore P12256 
Go to UniProtKB:  P12256
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP12256
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.211 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.4α = 88.3
b = 129.6β = 83.4
c = 156.7γ = 84.6
Software Package:
Software NamePurpose
AMoREphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-11-15
    Type: Initial release
  • Version 1.1: 2007-10-16
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2023-12-27
    Changes: Data collection, Database references
  • Version 1.4: 2024-04-03
    Changes: Refinement description