Crystal Structure of H2-Kb in complex with the mutant NP205-LCMV-V3A epitope YTAKYPNL, an 8-mer modified peptide from the LCMV
Gras, S., Guillonneau, C., Rossjohn, J.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
H-2 class I histocompatibility antigen, K-B alpha chain | 278 | Mus musculus | Mutation(s): 0  Gene Names: H2-K1, H2-K | ![]() | |
UniProt | |||||
Find proteins for P01901 (Mus musculus) Explore P01901  Go to UniProtKB:  P01901 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01901 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | 99 | Mus musculus | Mutation(s): 0  Gene Names: B2m | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01887 (Mus musculus) Explore P01887  Go to UniProtKB:  P01887 | |||||
IMPC:  MGI:88127 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01887 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NP205-LCMV epitope, YTAKYPNL | 8 | N/A | Mutation(s): 1  | ![]() | |
UniProt | |||||
Find proteins for Q91B91 (Mammarenavirus choriomeningitidis) Explore Q91B91  Go to UniProtKB:  Q91B91 | |||||
Entity Groups   | |||||
UniProt Group | Q91B91 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ACE Query on ACE | G [auth E], H [auth E] | ACETYL GROUP C2 H4 O IKHGUXGNUITLKF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 66.75 | α = 90 |
b = 85.05 | β = 111.33 |
c = 89.18 | γ = 90 |
Software Name | Purpose |
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XSCALE | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
PHASER | phasing |
PHENIX | refinement |