3P09

Crystal Structure of Beta-Lactamase from Francisella tularensis

• PDB DOI: https://doi.org/10.2210/pdb3P09/pdb

• Classification: HYDROLASE
• Organism(s): Francisella tularensis subsp. tularensis SCHU S4
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-09-27 Released: 2010-10-13 
• Deposition Author(s): Kim, Y., Makowska-Grzyska, M., Hasseman, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.207 
• R-Value Work: 0.162 
• R-Value Observed: 0.164 

Literature

Crystal Structure of Beta-Lactamase from Francisella tularensis

Kim, Y., Makowska-Grzyska, M., Hasseman, J., Anderson, W.F., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 3 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 65.63 kDa 
• Atom Count: 4,625 
• Modelled Residue Count: 528 
• Deposited Residue Count: 580 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-lactamase	A, B	290	Francisella tularensis subsp. tularensis SCHU S4	Mutation(s): 0  Gene Names: FTT_0611c EC: 3.5.2.6
UniProt
Find proteins for Q5NH60 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Explore Q5NH60  Go to UniProtKB:  Q5NH60

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A], D [auth A], E [auth A], F [auth A], G [auth A], H [auth B], I [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	J [auth B]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.207 
• R-Value Work: 0.162 
• R-Value Observed: 0.164 
• Space Group: P 2₁ 2₁ 2
• Diffraction Data: https://doi.org/10.18430/m33p09

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.652	α = 90
b = 143.466	β = 90
c = 46.89	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	data collection
HKL-3000	phasing
PHENIX	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-10-13 
Deposition Author(s): Kim, Y., Makowska-Grzyska, M., Hasseman, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2010-10-13
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance