Route of Substrate Entry in Prolyl Endopeptidase
Chiu, T.K., Li, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Prolyl endopeptidase | 693 | Aeromonas caviae | Mutation(s): 6  Gene Names: PROLYL ENDOPEPTIDASE | ![]() | |
UniProt | |||||
Find proteins for Q9X6R4 (Aeromonas caviae) Explore Q9X6R4  Go to UniProtKB:  Q9X6R4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9X6R4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZPR Query on ZPR | C [auth A], D [auth A] | N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL C18 H22 N2 O4 ORZXYSPOAVJYRU-HOTGVXAUSA-N | |||
SO4 Query on SO4 | E [auth A], F [auth A], G [auth A], H [auth A], I [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | J [auth A], K [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Entity ID: 3 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000692 (ZPR) Query on PRD_000692 | C [auth A], D [auth A] | Z-PRO-PROLINAL | Peptide-like / Inhibitor |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900003 Query on PRD_900003 | B | sucrose | Oligosaccharide / Nutrient |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 107.77 | α = 90 |
b = 107.77 | β = 90 |
c = 147.22 | γ = 120 |
Software Name | Purpose |
---|---|
EPMR | phasing |
CNS | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |