Download MendeleyCrystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide
Nguyen, T.T., Cummings, J.A., Tsai, C.-L., Barondeau, D.P., Raushel, F.M.To be published.
3ISI
Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide
- PDB DOI: https://doi.org/10.2210/pdb3ISI/pdb
- Classification: HYDROLASE
- Organism(s): Streptomyces coelicolor
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-08-25 Released: 2010-08-04
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.229
- R-Value Work: 0.175
- R-Value Observed: 0.178
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| renal dipeptidase | A [auth X] | 400 | Streptomyces coelicolor | Mutation(s): 0 |  |
UniProt | |||||
Find proteins for Q93J45 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)) Explore Q93J45 Go to UniProtKB: Q93J45 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q93J45 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| B88 Query on B88 | B [auth X] | (2S)-2-{[(S)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]methyl}butanedioic acid C7 H14 N O6 P LWODXTSWCZWQHR-RFZPGFLSSA-N |  | ||
| ZN Query on ZN | C [auth X], D [auth X] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.229
- R-Value Work: 0.175
- R-Value Observed: 0.178
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 96.69 | α = 90 |
| b = 96.69 | β = 90 |
| c = 104.6 | γ = 120 |
| Software Name | Purpose |
|---|---|
| Blu-Ice | data collection |
| PHASES | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2010-08-04 Deposition Author(s): Nguyen, T.T.
Revision History (Full details and data files)
- Version 1.0: 2010-08-04
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-09-06
Changes: Data collection, Database references, Derived calculations, Refinement description
