Crystal structure of alpha/beta superfamily hydrolase from Oenococcus oeni PSU-1
Nocek, B., Bigelow, L., Cobb, G., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Alpha/beta superfamily hydrolase | 272 | Oenococcus oeni PSU-1 | Mutation(s): 0  Gene Names: OEOE_1827 | ||
UniProt | |||||
Find proteins for Q04D10 (Oenococcus oeni (strain ATCC BAA-331 / PSU-1)) Explore Q04D10  Go to UniProtKB:  Q04D10 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q04D10 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Alpha/beta superfamily hydrolase | 272 | Oenococcus oeni PSU-1 | Mutation(s): 0  Gene Names: OEOE_1827 | ||
UniProt | |||||
Find proteins for Q04D10 (Oenococcus oeni (strain ATCC BAA-331 / PSU-1)) Explore Q04D10  Go to UniProtKB:  Q04D10 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q04D10 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | H [auth A] I [auth A] L [auth B] N [auth C] O [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | G [auth A], R [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
EDO Query on EDO | E [auth A] F [auth A] K [auth B] M [auth C] S [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | J [auth A], Q [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSO Query on CSO | A, B, C | L-PEPTIDE LINKING | C3 H7 N O3 S | CYS | |
MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 217.493 | α = 90 |
b = 40.58 | β = 107.5 |
c = 135.98 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | phasing |
SHELXD | phasing |
Coot | model building |
MLPHARE | phasing |
CCP4 | model building |
PHENIX | model building |
REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
CCP4 | phasing |
PHENIX | phasing |