3EGI

Methyltransferase domain of human trimethylguanosine synthase TGS1 bound to m7GpppA (inactive form)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.210 

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This is version 1.3 of the entry. See complete history


Literature

Structure analysis of the conserved methyltransferase domain of human trimethylguanosine synthase TGS1.

Monecke, T.Dickmanns, A.Strasser, A.Ficner, R.

(2009) Acta Crystallogr D Biol Crystallogr 65: 332-338

  • DOI: https://doi.org/10.1107/S0907444909003102
  • Primary Citation of Related Structures:  
    3EGI

  • PubMed Abstract: 

    Methyltransferases play an important role in the post-transcriptional maturation of most ribonucleic acids. The modification of spliceosomal UsnRNAs includes N2-dimethylation of the m(7)G cap catalyzed by trimethylguanosine synthase 1 (TGS1). This 5'-cap hypermethylation occurs during the biogenesis of UsnRNPs as it initiates the m(3)G cap-dependent nuclear import of UsnRNPs. The conserved methyltransferase domain of human TGS1 has been purified, crystallized and the crystal structure of this domain with bound substrate m(7)GpppA was solved by means of multiple-wavelength anomalous dispersion. Crystal structure analysis revealed that m(7)GpppA binds via its adenosine moiety to the structurally conserved adenosylmethionine-binding pocket, while the m(7) guanosine remains unbound. This unexpected binding only occurs in the absence of AdoMet and suggests an incomplete binding pocket for the m(7)G cap which is caused by the N-terminal truncation of the protein. These structural data are consistent with the finding that the crystallized fragment of human TGS1 is catalytically inactive, while a fragment that is 17 amino acids longer exhibits activity.


  • Organizational Affiliation

    Department of Molecular Structural Biology, Institute of Microbiology and Genetics, Georg-August-University Göttingen, Göttingen, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Trimethylguanosine synthase homolog
A, B, C, D
206Homo sapiensMutation(s): 0 
Gene Names: TGS1HCA137NCOA6IPPIMT
EC: 2.1.1
UniProt & NIH Common Fund Data Resources
Find proteins for Q96RS0 (Homo sapiens)
Explore Q96RS0 
Go to UniProtKB:  Q96RS0
PHAROS:  Q96RS0
GTEx:  ENSG00000137574 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96RS0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.252 
  • R-Value Work: 0.210 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 213.893α = 90
b = 213.893β = 90
c = 62.415γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
SHARPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-03-31
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2012-04-18
    Changes: Database references
  • Version 1.3: 2024-10-09
    Changes: Data collection, Database references, Derived calculations, Structure summary