Characteristics of Diiron Site with Large Cavity in Hemerythrin-like Domain of DcrH
Onoda, A., Okamoto, Y., Sugimoto, H., Mizohata, E., Inoue, T., Shiro, Y., Hayashi, T.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemerythrin-like domain protein DcrH | 136 | Nitratidesulfovibrio vulgaris | Mutation(s): 0  Gene Names: dcrH | ![]() | |
UniProt | |||||
Find proteins for Q726F3 (Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)) Explore Q726F3  Go to UniProtKB:  Q726F3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q726F3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CFO Query on CFO | C [auth A], D [auth B] | CHLORO DIIRON-OXO MOIETY Cl Fe2 O KBTPJIQAZMMQJH-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 33.425 | α = 95.21 |
b = 44.903 | β = 103.98 |
c = 48.076 | γ = 89.95 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
SPACE | data collection |
HKL-2000 | data reduction |